Repbase Reports |
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| 2001, Volume 1, Issue 1 |
| January 31, 2001 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 8 |
ATCOPIA49_I |
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Internal region of ATCOPIA49 copia-like LTR-retrotransposon - a consensus sequence. |
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Submitted: 01-Oct-2001 |
Accepted: 01-OCT-2001 |
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Key Words: Copia; LTR Retrotransposon; Transposable Element; ATCOPIA49LTR; ATCOPIA49_I; COPIA superfamily; LTR-retrotransposon; copia-like polyprotein; internal region; reverse transcriptase; internal portion |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: ATCOPIA49_I. |
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Journal: Repbase Reports 1(1), 8-8 (2001) |
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Abstract: ATCOPIA49_I is a consensus sequence of an internal portion of the ATCOPIA49 Copia-like endogenous retrovirus; there are 3 copies of ATCOPIA49_I present in the genome, they are flanked by ~2% divergent ATCOPIA47LTR, and by 5 bp-long target-site duplications. These copies are 1% divergent from the consensus sequence. ATCOPIA49_I encodes the 1361-aa ATCOPIA49p Copia-like polyprotein.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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