Repbase Reports |
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| 2001, Volume 1, Issue 1 |
| January 31, 2001 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 18 |
ATCOPIA58_I |
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Internal region of the ATCOPIA58 copia-like LTR-retrotransposon - a consensus sequence. |
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Submitted: 01-Oct-2001 |
Accepted: 01-OCT-2001 |
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Key Words: Copia; LTR Retrotransposon; Transposable Element; ATCOPIA58LTR; ATCOPIA58_I; COPIA superfamily; LTR-retrotransposon; copia-like polyprotein; gag; integrase; internal region; reverse transcriptase; Ribonuclease H; internal portion |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: ATCOPIA58_I. |
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Journal: Repbase Reports 1(1), 18-18 (2001) |
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Abstract: ATCOPIA58_I is a consensus sequence of an internal region of the ATCOPIA58 Copia-like endogenous retrovirus. There are 4 copies of ATCOPIA58_I present in the genome; they are 98% identical to the consensus sequence, and are flanked by ~1% divergent ATCOPIA58LTR LTRs and 5-bp target-site duplications. ATCOPIA58_I encodes the 1021-aa ATCOPIA58p Copia-like polyprotein. Presumably, ATCOPIA58 was a semi-autonomous endogenous retrovirus. It is ~85% identical to ENDOVIR1.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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