Repbase Reports |
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| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 20 |
ATCOPIA66_I |
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Internal region of ATCOPIA66 copia-like LTR-retrotransposon - a consensus sequence. |
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Submitted: 05-Nov-2001 |
Accepted: 05-NOV-2001 |
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Key Words: Copia; LTR Retrotransposon; Transposable Element; ATCOPIA66LTR; ATCOPIA66_I; COPIA superfamily; LTR-retrotransposon; copia-like polyprotein; internal region; internal portion |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of ATCOPIA66 copia-like LTR-retrotransposon - a consensus sequence. |
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Journal: Repbase Reports 1(2), 20-20 (2001) |
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Abstract: ATCOPIA66_I is an internal region of the ATCOPIA66 Copia-like endogenous retrovirus flanked by the 1% divergent ATCOPIA66LTR long terminal repeats, and by a 5-bp target-site duplication. There are two copies of ATCOPIA66 present in the genome, they are 99% and 98% identical to the consensus sequence. ATCOPIA66's closest relative is 93% identical to the consensus sequence (ATCOPIA66A: AC007188, positions 36655-41067). ATCOPIA66_I encodes the 1372-aa Copia-like polyprotein ATCOPIA66p.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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