Repbase Reports

2001, Volume 1, Issue 2
February 28, 2001
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 24

ATCOPIA69_I

Internal region of ATCOPIA69 copia-like LTR-retrotransposon.

Submitted:
05-Nov-2001
Accepted:
05-NOV-2001
Key Words:
Copia; LTR Retrotransposon; Transposable Element; ATCOPIA69LTR; ATCOPIA69_I; COPIA superfamily; LTR-retrotransposon; copia-like polyprotein; internal region; internal portion
Source:
Arabidopsis thaliana
Organism:
Arabidopsis thaliana
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
[] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Internal region of ATCOPIA69 copia-like LTR-retrotransposon.
Journal:
Repbase Reports 1(2), 24-24 (2001)
Abstract:
ATCOPIA69_I is an internal region of the ATCOPIA69 Copia-like endogenous retrovirus flanked by the 4% divergent ATCOPIA69LTRs and a 5-bp target-site duplication. ATCOPIA69p, a 1348-aa Copia-like polyprotein encoded by ATCOPIA69_I is free of false stop codons and frame-shifts. QSEVMRAIPYQSVVGSLMYSMISTRPDLAHSVGLVCKFMSKPLKEHWQAVK*ILRYISGTLDRKLCYKNE GECILEGYCDSDYAADKGSRRSTSGVVFTFGGNTISWKSNLQKVVALSSTEAEYMALTDAAKEAIWLKGL VNELGFTQKTVNIHCDSQSAIALAKNAVYHERTKHIDVKYHFIRDLVNNGEVQVLKIDTEDNPADIFTKV LPVSKFQDALELLRVSQN.
Derived:
Positions 133749 129480 Accession No AL161502 GenBank
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute