Repbase Reports |
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| 2001, Volume 1, Issue 3 |
| March 31, 2001 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 1 |
ATCOPIA18A_I |
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Internal region of the ATCOPIA18A copia-like LTR-retrotransposon. |
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Submitted: 30-Nov-2001 |
Accepted: 30-NOV-2001 |
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Key Words: Copia; LTR Retrotransposon; Transposable Element; ATCOPIA18ALTR; ATCOPIA18A_I; COPIA superfamily; LTR-retrotransposon; copia-like polyprotein; internal region; reverse transcriptase; the ATCOPIA18A family; internal portion |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal portion of the ATCOPIA18A copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1(3), 1-1 (2001) |
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Abstract: ATCOPIA18A_I is an internal region of the ATCOPIA18A Copia-like endogenous retrovirus flanked by the 99% identical ATCOPIA18ALTR long terminal repeats, and a 5-bp target-site duplication (GTGTT). ATCOPIA18A is a subfamily of the ATCOPIA18 family. There is a 77% identity between the ATCOPIA18A_I and ATCOPIA18I internal sequences. ATCOPIA18A_I encodes remnants of the ATCOPIA18Ap Copia-like polyprotein. The ORF which encodes ATCOPIA18Ap is slightly damaged by false stop codons and other mutations.
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Derived: Positions 54058 49009 Accession No AB025602 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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