Repbase Reports |
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| 2001, Volume 1, Issue 3 |
| March 31, 2001 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4 |
ATCOPIA78_I |
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Internal portion of the ATCOPIA78 copia-like LTR-retrotransposon - a consensus sequence. |
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Submitted: 30-Nov-2001 |
Accepted: 30-NOV-2001 |
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Key Words: Copia; LTR Retrotransposon; Transposable Element; ATCOPIA78 family; ATCOPIA78LTR; ATCOPIA78_I; COPIA superfamily; LTR-retrotransposon; internal region; pol; reverse transcriptase; internal portion |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal portion of the ATCOPIA78 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1(3), 4-4 (2001) |
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Abstract: ATCOPIA78_I is a consensus sequence of an internal region of ATCOPIA78 Copia-like retroelement flanked by ~1% divergent LTRs, ATCOPIA78LTR, and 5 bp-long target-site duplicates. ATCOPIA78 is one of ~100 families of Copia-like LTR-retrotransposons, which were active in the A. thaliana genome during last 20 Myrs. The consensus sequence has been reconstructed based on eight copies present in the genome. These copies are ~99.4% identical to the consensus sequence. ATCOPIA78_I encodes ATCOPIA78p, a 1352-aa Copia-like polyprotein. It's possible that some copies of ATCOPIA78 are still active retrotransposons.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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