Repbase Reports |
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| 2001, Volume 1, Issue 4 |
| April 30, 2001 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4 |
ATCOPIA94_I |
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Internal region of the ATCOPIA94 copia-like LTR-retrotransposon. |
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Submitted: 27-Dec-2001 |
Accepted: 27-DEC-2001 |
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Key Words: Copia; LTR Retrotransposon; Transposable Element; ATCOPIA94LTR; ATCOPIA94_I; COPIA superfamily; LTR-retrotransposon; copia-like polyprotein; internal region; reverse transcriptase; the ATCOPIA94 family; internal portion |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal portion of the ATCOPIA94 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1(4), 4-4 (2001) |
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Abstract: ATCOPIA94_I is an internal region of the ATCOPIA94 Copia-like endogenous retrovirus. ATCOPIA94 forms a separate family of Copia-like retroviruses present in the A. thaliana genome since members of other families are less than 75% identical to ATCOPIA94_I. ATCOPIA94_I encodes remnants of the ATCOPIA94p Copia-like polyprotein. The ORF which encodes ATCOPIA94p is damaged by one frame shift induced by a 5-bp deletion at position 3264 (masked by XXXX in the 1436-aa ATCOPIA94p sequence). Such a low damage indicates that ATCOPIA94 has been retrotransposed recently. ATCOPIA94 is inserted exactly between two hypothetical genes that are 86% identical to each other.
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Derived: Positions 32279 36916 Accession No AC022354 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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