Repbase Reports |
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| 2002, Volume 2, Issue 1 |
| January 31, 2002 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 2 |
ATCOPIA96_I |
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Internal portion of the ATCOPIA96 copia-like LTR-retrotransposon - a fossil. |
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Submitted: 08-Feb-2002 |
Accepted: 04-MAR-2002 |
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Key Words: Copia; LTR Retrotransposon; Transposable Element; ATCOPIA96 family; ATCOPIA96LTR; ATCOPIA96_I; COPIA superfamily; LTR-retrotransposon; internal portion; pol; reverse transcriptase |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: The ATCOPIA96 family of copia-like LTR-retrotransposons. |
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Journal: Repbase Reports 2(1), 2-2 (2002) |
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Abstract: ATCOPIA96_I is an internal portion of the ATCOPIA96 Copia-like LTR retrotransposon flanked by 5% divergent LTRs, ATCOPIA96LTR, and 5 bp-long TSDs (AAATA). ATCOPIA96 is one of ~100 families of Copia-like LTR-retrotransposons, which were active in the A. thaliana genome during last 20 Myrs. ATCOPIA88 is the closest family to ATCOPIA96; there is only a 72% identity between ATCOPIA88_I and ATCOPIA96_I. A few false stop-codons and frameshifts have damaged ORF which encoded originally an intact Copia-like polyprotein.
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Derived: Positions 8778 13283 Accession No AC006219 Genbank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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