Repbase Reports |
|---|
| 2002, Volume 2, Issue 1 |
| January 31, 2002 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 29 |
KOPI1_I |
|||
|---|---|---|---|
LTR retrotransposon; long terminal repeat; Copia superfamily; KOPI1_I. |
|||
|
Submitted: 08-Feb-2002 |
Accepted: 08-FEB-2002 |
||
|
Key Words: Copia; LTR Retrotransposon; Transposable Element; COPIA superfamily; KOPI1_I; Long terminal repeat; internal portion |
|||
|
Source: Takifugu rubripes |
Organism: Takifugu rubripes |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu |
|
| [] |
Authors: Smit,A.F. |
||
|
Title: Initial survey of interspersed repeats in Takifugu rubripes. |
|||
|
Journal: Repbase Reports 2(1), 29-29 (2002) |
|||
Abstract: The product of ORF 121-1923 is 62% similar to the C-terminal part of the pol gene of TNT and RIR1 in Rice, and to other representatives of the Copia class of LTR elements. The consensus is 5' truncated.. Perhaps a dozen copies in Fugu, mostly as solo-LTRs (KOPI1_LTR). On average, copies are 1.2 % diverged from the consensus.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||