Repbase Reports |
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| 2002, Volume 2, Issue 4 |
| April 30, 2002 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 11 |
DNA9TA1_DR |
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DNA9TA1_DR is a composite nonautonomous DNA transposon - a consensus. |
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Submitted: 02-May-2002 |
Accepted: 02-MAY-2002 |
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Key Words: DNA transposon; Transposable Element; Nonautonomous; DNA9TA1_DR; nonautonomous DNA transposon |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: DNA9TA1_DR, a composite nonautonomous DNA transposon from zebrafish. |
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Journal: Repbase Reports 2(4), 11-11 (2002) |
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Abstract: The consensus sequence was reconstructed based on 7 copies present in sequenced DNA representing 1% of the genome. Approximately 700 copies of DNA9TA1_DR are expected to populate the complete zebrafish genome. The element was active recently, its copies are only 2% divergent from the consensus sequence. Given its length, 9-bp terminal inverted repeats, the TA targets site duplications, DNA9TA1_DR is a quite unusual nonautonomous DNA transposon. Its classification is not certain yet, although it is expected to be a member of the Mariner/Tc1 superfamily. DNA9TA1_TR carries also remnants of the HARBINGER2N_DR DNA transposon (positions 2186-2311). The genome harbors also copies of an ancient transposon which is ancestral to DNA9TA1_TR and does not have insertion of HARBINGER2N_DR.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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