Repbase Reports |
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| 2002, Volume 2, Issue 4 |
| April 30, 2002 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 23 |
PROTOP1_DR |
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PROTOP1_DR is a nonautonomous P-like DNA transposon - a consensus. |
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Submitted: 02-May-2002 |
Accepted: 02-MAY-2002 |
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Key Words: P; DNA transposon; Transposable Element; Nonautonomous; nonautonomous DNA transposon; P superfamily; PROTOP1_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: PROTOP1_DR, a nonautonomous P-like DNA transposon from zebrafish. |
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Journal: Repbase Reports 2(4), 23-23 (2002) |
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Abstract: The consensus sequence was reconstructed based on 10 copies present in sequenced DNA that represents ~1% of the genome. Approximately 1000 copies of PROTOP1_DR are expected to populate the complete zebrafish genome. PROTOP1_DR copies are 7% divergent from the consensus sequence. This element is characterized by 33-bp terminal inverted repeats and 7-bp targets site duplications. We classify this element as a nonautonomous DNA transposon from the P superfamily. PROTOP, PROTOP_A and PROTOP_B DNA transposons found previously in D. melanogaster are characterized also by 7-bp TSD and 30-bp TIRs similar to those in PROTOP1_DR.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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