Repbase Reports |
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| 2002, Volume 2, Issue 5 |
| May 31, 2002 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 22 |
HAT1_DR |
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HAT1_DR is an autonomous hAT-like DNA transposon. |
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Submitted: 05-Jun-2002 |
Accepted: 05-JUN-2002 |
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Key Words: hAT; DNA transposon; Transposable Element; HAT1N_DR; HAT1_DR; hAT superfamily; transposase |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: HAT1_DR, an autonomous hAT-like DNA transposon from zebrafish. |
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Journal: Repbase Reports 2(5), 22-22 (2002) |
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Abstract: HAT1_DR is an autonomous hAT-like DNA transposon. It is flanked by a 8-bp TSD. This element encodes a 597-aa transposase, HAT1_DRp. HAT1_DRp is encoded by 4 exons (ORF positions 654-881, 1152-2111, 2205-2390, 2487-2894). The zebrafish genome harbors subfamilies of nonautonomous DNA transposons that are derivates of autonomous elements similar to HAT1_DR. HAT1N_DR is one of these subfamilies; its consensus sequence shares ~85% identical 238-bp and 138-bp termini with HAT1_DR. HAT1_DR and HATN1_DR elements had imperfect 9-bp terminal inverted repeats (1 mismatch) at the time of their transposition in the past. HARB1DRp1: MDAPRKRCRPSVVWEHFHLETPNKVRCMYCDRQLAYCNNTSSMMRHLRSTHPAILGGAED GPVPRPASHTAGSSKQGRQKELDEALVDMVVKDLQPFTIVEDMGFRAFVNKLDPSYVLPS RKALKTMVMEKYNSTKEKIMGDIQKAQFVSLTADMWSSINMDGYLDVTCHFITPEAKMAT VVLGVVRFYQTHTAQHLMEAKTLLMSEWGITSKVQCLVTDNASNMMLSAQLLHLRHIPCF AHNLNLIVKKALDQTPLVSEIRQKARKIVGLFRSSCKAKDKLEEMQTLMGRPTLKLIQEV ETRWNSTYDMLQRLFEQREPVAAAISSLKADTALLSSMEYDVVQEAMSLLQPFKLATTEL SEEQRVSASKLIPLYRMLQHKLTEKKGLAKQESVVQLGSHLQEGLQSRCGGYESFRTLAL ATLLDPRFKTVAFGNTGKGQEAERHLTMECASLMRNQTSHDPQLSASMPSSSSSSSSSSS STTPAESQDSLWELFDNRVRESNLTSSVTADATVEVKKYITDAFLPRNEDPLKYWKEREN IFPNLYVLAQKYLCMPATSVPCERIFSKAGEIICKKRSRPSPSTAEHLIFLNKNLYL.
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Derived: Positions 79447 82738 Accession No AL603743 Genbank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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