Repbase Reports |
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| 2002, Volume 2, Issue 6 |
| June 30, 2002 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 3 |
DNA13TA1a_DR |
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DNA13TA1a_DR is a nonautonomous DNA transposon - a consensus. |
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Submitted: 11-Jul-2002 |
Accepted: 11-JUL-2002 |
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Key Words: DNA transposon; Transposable Element; Nonautonomous; DNA13TA1_DR; DNA13TA1a_DR; Dr000073; nonautonomous DNA transposon |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: DNA13TA1_DR, an ancient family of nonautonomous DNA transposons from zebrafish. |
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Journal: Repbase Reports 2(6), 3-3 (2002) |
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Abstract: This element is characterized by 13-bp terminal inverted repeats and the TA targets site duplications. Its classification is not certain yet, although it is expected to be a member of the Mariner/Tc1 superfamily. There are several hundred copies of DNA13TA1_DR present in the zebrafish genome; they are ~95% identical with the consensus sequence. DNA13TA1a_DR is a young subfamily of the old DNA13TA1_DR family. Their consensus sequences are 92% identical with each other. Interestingly, the 13-bp TIR in the DNA13TA1a_DR consensus sequence has one mismatch (C at position 3). However, the DNA13TA1_DR consensus sequence has the perfect TIR. Presumably, one of the ancient DNA13TA1_DR genomic copies served as a master copy that started the DNA13TA1a_DR family. Unclassified version of DNA13TA1a_DR was identified as Dr000073 [1].
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Derived: [2] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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