Repbase Reports |
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| 2003, Volume 3, Issue 4 |
| April 30, 2003 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 79 |
GYPSY5-I_AG |
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GYPSY5-I_AG is an internal portion of the GYPSY5_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 08-May-2003 |
Accepted: 08-MAY-2003 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD; AP protease; GYPSY5-I_AG; GYPSY5-LTR_AG; GYPSY5_AG; Gyspy clade; gag; integrase; reverse transcriptase |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
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Authors: Pavlicek,A., Kapitonov,V.V. and Jurka,J. |
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Title: GYPSY5_AG, a family of LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3(4), 79-79 (2003) |
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Abstract: GYPSY5_AG is a family of autonomous Gypsy-like LTR retrotransposons. GYPSY5-I_AG, an internal portion of GYPSY5_AG, is flanked by GYPSY5-LTR_AG LTRs. The GYPSY5-I_AG consensus sequence was reconstructed based on multiple alignment of 15 copies; they are less than 1% divergent from the consensus sequence. Two elements are 100% identical to the consensus and contain intact ORF, thus the family appear to be still active. The consensus sequence encodes the 1469-aa GYPSY5_AGp protein (pos. 35-4441), composed of gag (zinc-finger, 309-357), protease (403-492), reverse transcriptase (pos. 668-837) and integrase (pos. 1181-1332) domains.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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