Repbase Reports |
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| 2003, Volume 3, Issue 9 |
| September 30, 2003 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 168 |
GYPSY13-I_AG |
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GYPSY13-I_AG is an internal portion of retrotransposon GYPSY13_AG - a consensus sequence. |
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Submitted: 03-Oct-2003 |
Accepted: 03-OCT-2003 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag; AP protease; GYPSY13-I_AG; GYPSY13-LTR_AG; Gypsy clade; RNase-H; integrase GYPSY13_AG; mdg1 lineage; reverse transcriptase |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
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Authors: Tubio,M.J., Costas,C.J. and Naveira,F.H. |
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Title: GYPSY13_AG, a member of the mdg1 lineage of the Ty3/gypsy group of LTR retrotransposons. |
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Journal: Repbase Reports 3(9), 168-168 (2003) |
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Abstract: GYPSY13_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its ORF2, is phylogenetically grouped with Drosophila representatives of the mdg1 lineage. GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY14_AG, GYPSY15_AG, GYPSY16_AG, and GYPSY17_AG are other members of this same lineage in Anopheles gambiae. The GYPSY13-I_AG consensus was reconstructed after multiple alignment of 11 copies. The consensus encodes the 405-aa GYPSY13_AG1p gag-like protein (pos. 1072-2286) and the 1246-aa GYPSY13_AG2p (pos. 2193-5930). The sequence of the LTRs flanking GYPSY13-I_AG is deposited as GYPSY13-LTR_AG.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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