Repbase Reports |
|---|
| 2004, Volume 4, Issue 1 |
| January 31, 2004 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 11 |
GYPSY23-I_AG |
|||
|---|---|---|---|
GYPSY23-I_AG is an internal portion of retrotransposon GYPSY23_AG - a consensus sequence. |
|||
|
Submitted: 05-Feb-2004 |
Accepted: 05-FEB-2004 |
||
|
Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD; AP protease; GYPSY23-I_AG; GYPSY23-LTR_AG; GYPSY23_AG; Gypsy clade; RNase-H; gag; integrase; mag lineage; reverse transcriptase |
|||
|
Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
|
| [] |
Authors: Tubio,M.J., Costas,C.J. and Naveira,F.H. |
||
|
Title: GYPSY23_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
|||
|
Journal: Repbase Reports 4(1), 11-11 (2004) |
|||
Abstract: GYPSY23_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its reverse transcriptase, is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY18_AG, GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG and GYPSY28_AG are other members of this same lineage in Anopheles gambiae. The GYPSY23-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 1358-aa GYPSY23_AGp gag-pol like protein (pos. 280-4353). The sequence of the LTRs flanking GYPSY23-I_AG is deposited as GYPSY23-LTR_AG.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||