Repbase Reports
2004, Volume 4, Issue 10
October 31, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 265

HELITRON12_CB

Caenorhabditis briggsae family of repetitive elements - a consensus.

Submitted:
17-Nov-2004 		Accepted:
17-NOV-2004
Key Words:
Helitron; DNA transposon; Transposable Element; Cb000372; Cb000512; Cb000526; DNA; HELITRON class; HELITRON12_CB
Source:
Caenorhabditis briggsae 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[] Authors:
Pavlicek,A. and Jurka,J.
Title:
HELITRON12_CB - a family of nonautonomous HELITRON transposons.
Journal:
Repbase Reports 4(10), 265-265 (2004)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. Copies are 89% identical to the consensus. HELITRON12_CB is flanked by TC-CTGG termini and contains a palindrome-like sequence in positions ~242-279. HELITRON12_CB is closely related to HELITRON13_CB and distantly to HELITRON11_CB, HELITRON10_CB, HELITRON5_CB, HELITRON4_CB, and HELITRON6_CB.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,D.L., Bao,Z., Blasiar,D., Blumenthal,T., Brent,R.M., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol 1(2), 166-192 (2003)

© 2001-2024 - Genetic Information Research Institute