Repbase Reports
2004, Volume 4, Issue 11
November 30, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 294

MARINER45_CB

Caenorhabditis briggsae family of DNA transposons - a consensus.

Submitted:
07-Dec-2004 		Accepted:
07-DEC-2004
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; Cb000088; DNA; MARINER45_CB; mariner/Tc1 superfamily; transposase
Source:
Caenorhabditis briggsae 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[] Authors:
Pavlicek,A. and Jurka,J.
Title:
MARINER45_CB - a family of autonomous mariner/Tc1-like transposons.
Journal:
Repbase Reports 4(11), 294-294 (2004)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. Copies are 99% identical to the consensus. MARINER45_CB contains 285bp-long TIRs and is flanked by TNA target duplications. C|TNA|G target motif. The family contains two autonomous genomic elements with an intact ORF encoding for a 298 aa transposase, and several nonautonomous copies with deletions in the ORF. MARINER45_CB is related to TC5, TC4 from C. elegans and FOT1_FO from Fusarium oxysporum. MARINER45_CB_ORF: 1060-1954 (298 aa) MELEKEVRMHIENGKILHDSVLRFLIAGIIKKYKIDIENFIGSESWLNGWKARFGITSRKITKFVSTIRH KTRDQIEKDSKEFVTAANQVFPLYHPSNIYNADQSGFQIEMHTARTLTLKGSRNVHCVVGSESSTTHSYT VLPLISASGKLHPKLFVTLKEPKGQFPQKGHFQASNLEVTCHTSHIMTKELMKVFFQKIVFDSSMPKDAL LIVDSWNSWKDTAAIDSVTPSSHKLKLLTIPAGCTGRIQPCDVGIFGSFKKVVKTLTNYAQLTNSNYKFQ TRDETLKVSYLFVKQFKK.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,D.L., Bao,Z., Blasiar,D., Blumenthal,T., Brent,R.M., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol 1(2), 166-192 (2003)

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