Repbase Reports

2004, Volume 4, Issue 3
March 31, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 68

GYPSY38-I_AG

GYPSY38-I_AG is an internal portion of retrotransposon GYPSY38_AG - a consensus sequence.

Submitted:
16-Apr-2004
Accepted:
16-APR-2004
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag; AP protease; GYPSY38-I_AG; GYPSY38-LTR_AG; Gypsy clade; MDG3 lineage; RNase-H; reverse transcriptase; integrase GYPSY38_AG
Source:
Anopheles gambiae
Organism:
Anopheles gambiae
Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
[] Authors:
Tubio,M.J., Costas,C.J. and Naveira,F.H.
Title:
GYPSY38_AG, a member of the MDG3 lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.
Journal:
Repbase Reports 4(3), 68-68 (2004)
Abstract:
GYPSY38_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its Reverse Transcriptase RNase and Integrase is phylogenetically grouped with representatives of the MDG3 lineage of other organisms. GYPSY29_AG, GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG, GYPSY34_AG, GYPSY35_AG, GYPSY36_AG and GYPSY37_AG are other members of this same lineage in Anopheles gambiae. The GYPSY38-I_AG consensus was reconstructed after multiple alignment of 6 copies. The consensus encodes the 1328-aa GYPSY38_AGp gag-pol like protein (pos. 387-4370). The sequence of the LTRs flanking GYPSY38-I_AG is deposited as GYPSY38-LTR_AG.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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