Repbase Reports

2004, Volume 4, Issue 3
March 31, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 70

GYPSY39-I_AG

GYPSY39-I_AG is an internal portion of retrotransposon GYPSY39_AG - a consensus sequence.

Submitted:
16-Apr-2004
Accepted:
16-APR-2004
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag; AP protease; GYPSY lineage; GYPSY39-I_AG; GYPSY39-LTR_AG; Gypsy clade; RNase-H; reverse transcriptase; integrase GYPSY39_AG
Source:
Anopheles gambiae
Organism:
Anopheles gambiae
Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
[] Authors:
Tubio,M.J., Costas,C.J. and Naveira,F.H.
Title:
GYPSY39_AG, a member of the Gypsy lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.
Journal:
Repbase Reports 4(3), 70-70 (2004)
Abstract:
GYPSY39_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its Reverse Transcriptase, RNase and Integrase is phylogenetically grouped with representatives of the GYPSY lineage of other organisms. GYPSY40_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG, GYPSY44_AG, GYPSY45_AG, GYPSY46_AG and GYPSY47_AG are other members of this same lineage in Anopheles gambiae. The GYPSY39-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 359-aa GYPSY39_AG1p gag-like polyprotein (pos. 574-1650) and the 1168?aa GYPSY39_AG2p pol-like polyprotein (pos. 1605-5108). The sequence of the LTRs flanking GYPSY39-I_AG is deposited as GYPSY39-LTR_AG.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute