Repbase Reports |
|---|
| 2004, Volume 4, Issue 3 |
| March 31, 2004 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 72 |
GYPSY40-I_AG |
|||
|---|---|---|---|
GYPSY40-I_AG is an internal portion of retrotransposon GYPSY40_AG - a consensus sequence. |
|||
|
Submitted: 16-Apr-2004 |
Accepted: 16-APR-2004 |
||
|
Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 4-bp TSD gag; AP protease; GYPSY lineage; GYPSY40-I_AG; GYPSY40-LTR_AG; Gypsy clade; RNase-H; reverse transcriptase; integrase GYPSY40_AG |
|||
|
Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
|
| [] |
Authors: Tubio,M.J., Costas,C.J. and Naveira,F.H. |
||
|
Title: GYPSY40_AG, a member of the Gypsy lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
|||
|
Journal: Repbase Reports 4(3), 72-72 (2004) |
|||
Abstract: GYPSY40_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its Reverse Transcriptase, RNase and Integrase is phylogenetically grouped with representatives of the GYPSY lineage of other organisms. GYPSY39_AG, GYPSY41_AG, GYPSY42_AG, GYPSY43_AG, GYPSY44_AG, GYPSY45_AG, GYPSY46_AG and GYPSY47_AG are other members of this same lineage in Anopheles gambiae. The GYPSY40-I_AG consensus was reconstructed after multiple alignment of 5-7 copies. The consensus encodes the 346-aa GYPSY40_AG1p gag-like polyprotein (pos. 222-1259) and the 1115?aa GYPSY40_AG2p pol-like polyprotein (pos. 1217-4561). The sequence of the LTRs flanking GYPSY40-I_AG is deposited as GYPSY40-LTR_AG.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||