Repbase Reports
2004, Volume 4, Issue 4
April 30, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 108

HAT1_CB

Caenorhabditis briggsae family of DNA transposons - a consensus.

Submitted:
13-May-2004 		Accepted:
13-MAY-2004
Key Words:
hAT; DNA transposon; Transposable Element; Cb000188; DNA; HAT1_CB; hAT superfamily
Source:
Caenorhabditis briggsae 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[] Authors:
Pavlicek,A. and Jurka,J.
Title:
HAT1_CB - a family of nonautonomous hAT-like transposons.
Journal:
Repbase Reports 4(4), 108-108 (2004)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. Copies are ~98% identical to the consensus. The HAT1_CB central regions bears similarity to hAT transposases. HAT1_CB contains 15bp-long TIRs terminated by CA-TG bases. Flanked by 8bp-long target duplications.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,D.L., Bao,Z., Blasiar,D., Blumenthal,T., Brent,R.M., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol 1(2), 166-192 (2003)

© 2001-2024 - Genetic Information Research Institute