Repbase Reports
2004, Volume 4, Issue 4
April 30, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 109

LINE2A_CB

Caenorhabditis briggsae family of LINE retrotransposons - a consensus.

Submitted:
13-May-2004 		Accepted:
13-MAY-2004
Key Words:
CR1; Non-LTR Retrotransposon; Transposable Element; CR-1; Cb000170; LINE; LINE2A_CB
Source:
Caenorhabditis briggsae 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[] Authors:
Pavlicek,A. and Jurka,J.
Title:
LINE2A_CB - a young autonomous family of LINE retrotransposons.
Journal:
Repbase Reports 4(4), 109-109 (2004)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. Copies are >98% identical to the consensus. Distantly similar to LINE2A_CE and CR1-5_AG. LINE2A_CB contains a single open reading frames with endonuclease and RT domains. LINE2A_CB_ORF: 75-3774 (1233 aa) MVVTIIKHKPRNKRKALSALKDENGGKKSKLSEYSSKEAVDDIIESVDDMSNPLYDLLSNDFKSKEEFTV NDIAMMFKSLAETILKLQSQNTMLKNQNCILNANLSNLTEKVDGLEENLKLLSSQPKESPKPPTTLIKTF ASAVASTISAPESQITFMRAASLANSEDARKSNVIIKNIDLSEEAIEKAEIRLQNCQGLRYFDAIGFSHT SSGQRAAHCAPGIQVQGGSKNCPHQIQLNQSFNTGVLECVSPPRPLQTRTREISTILENGDPKEQRGRSN HLYGSQSGSRQSCLQRKSGAVAMGQKTLDPRKFLKIGYTNSCSIKNKVLQLDLWSSNSNIDILCLVETKI DSNYPDSLLSLDEKYAVIRKDRNRHGGGLAILIKKPINYTVVSLPTHLESVEILSVDIKIHGKTTRLIVS YNPNHNYCFKDLRESLNILLSTENPSIITGDFNCAHVDWNSYTASDSQCQSLLDFSLYNGLTQFVQNPTR LEQPNILDLVFTNSMDIIRDVIVGEKFSDHCRIEIDTFILLNSISPLKSTKNFKKGDFRSMNYILSNIDW DLRFSTMSIDEMFDDLRGIILELIESFVPTETHRIHNIIYSKETKQLLKKKLLIWKKAGNSDEYKHVSAL FKRSLVKSEEERIYKRLNSGSKNFFGFMKSKFKGNSDIPAIRYKSNENVIMSDEGKAEIFGDCFSEFFNI DKDILPATGNLISKFSSDVIFTPENIELLLYKLKGRNNTSPDSIPSIFLKRACTPLAIPLCIIFTESYRV GRIPKSWKEAIVMPLHKKGSRSDPLNYRPISLTSNICKIMEKLIRKHLVQYLSENNLLSEKQFGFLNQRS TISQLIAYQNKLVFNSLNGLDTHSVYIDFQRAFDTVPINKLIHKLESFGISPKLRNWLHSFVTDRKFQVK INDILSKERRVLSGVPQGSVLGPTLFLLYINCIGDKFQSDYLLFADDLKIYDTNDRLIDADLIELENWCS KWKMKAAPKKCEYIKFNATRKYANSNVMNPKLNQALIPPVENVRDLGIYFSSNLSFHYHYSLIIRKSHQR INMFFSILKNASWSVFIKCYTIYIRPLLEYGTIVTSPILKDHIIKLESVQKSFVFRIFKKFRMAYTSYFE ALEECQLSSLEYRRLYNDLVYTYKIIVSKEIIMEVPIFEIFNHAGSLRRHKYYLKSLIKNSTKISSQFLS NRVIRCWNSLAKVCPVKPSSAAFKNRLLSCDLKHFLVLNSTNY.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,D.L., Bao,Z., Blasiar,D., Blumenthal,T., Brent,R.M., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol 1(2), 166-192 (2003)

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