Repbase Reports
2004, Volume 4, Issue 4
April 30, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 114

MARINER18_CB

Caenorhabditis briggsae family of DNA transposons - a consensus.

Submitted:
13-May-2004 		Accepted:
13-MAY-2004
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Cb000173; DNA; MARINER18_CB; mariner/Tc1 superfamily
Source:
Caenorhabditis briggsae 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[] Authors:
Pavlicek,A. and Jurka,J.
Title:
MARINER18_CB - an active family of young autonomous mariner/Tc1-like transposons.
Journal:
Repbase Reports 4(4), 114-114 (2004)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. Copies are >98% identical to the consensus. MARINER18_CB encodes a 339bp-long transposase, contains 27bp-long imperfect TIRs and is flanked by TA target duplications. Distantly similar to HSMAR1 and MARINER2_CE. MARINER18_CB_ORF: 170-1187 (339 aa) MSDQKFRLRAFLWHQFKEGKSAAEAHRSLSPVFGEEAISESQCRRWFQRFRSGDERLEDESRPGRPEQVD NDALRAAIEVDPCQTTLSLSEQFDCDFSTISRHLHAIGKTNRCGKWVPHELSDSNKERRVEVANILMRRS KNRGFFDSILTSDEKWIQWDNNGRKKQWLSPGETPKPTPKPDIHGKKVMICVWWNTRGLVHFELLRPGQT VNADLYKDQLDRVDQALKRQGVDTSTTLLLHDNARPHTAKIIQQKTQELGWEVLPHPPYSPDLAPSDYHL FRSMQHHLAEKKFESGEEVQIWVADYFESQPEEFFKKGIAELRTRWQQVVNNNGEYLID.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,D.L., Bao,Z., Blasiar,D., Blumenthal,T., Brent,R.M., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol 1(2), 166-192 (2003)

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