Repbase Reports |
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| 2004, Volume 4, Issue 6 |
| June 30, 2004 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 151 |
GYPSY56-I_AG |
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GYPSY56-I_AG is an internal portion of retrotransposon GYPSY56_AG - a consensus sequence. |
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Submitted: 09-Jul-2004 |
Accepted: 09-JUL-2004 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag; AP protease; GYPSY56-I_AG; GYPSY56-LTR_AG; Gypsy clade; RNase-H; integrase GYPSY56_AG; mag lineage; reverse transcriptase |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
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Authors: Tubio,M.J., Costas,C.J. and Naveira,F.H. |
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Title: GYPSY56_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4(6), 151-151 (2004) |
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Abstract: GYPSY56_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY56-I_AG consensus was reconstructed after multiple alignment of 5 copies. The consensus encodes the 1504-aa GYPSY56_AGP gag-pol like polyprotein (pos. 202-4713). The sequence of the LTRs flanking GYPSY56-I is deposited as GYPSY56-LTR_AG. GYPSY56_AGP: MNPSGSESSEEEQRRLSQMFWQQSAAAVHQPASGSSSAFVLGSLDQQARGQVASVQNPPSLVTA PAQNAGVPPSLSAAPGQNATISPSHNTGQTLSSQPQNASSPDLMQMILQLQIQMNQLMMQKQHQ PERQSVSVPVLNPEQILDSLSSHVREFQYDEEAKITFAAWYARYEDFFAKDASRLEDEAKVRLL VRKLGAAEYNRYANFILPRYTRDFSFQETINKLTALFGNRESLLSRRYKCLNTTKARGEDYLSY ACRVNRVCVDFEIGKISEEQLKCLVFVCGIKNEEDVEIRTRLLSRIEDRTDITLESLTADCQRI INLKEDSAMIEKVHEGNVYAVKKDVKQQQGFQHRQRSKQQLKFYRSCWSCGGQHLQRDCTRKRI VCNVCGKQGHIGKNCFHRRKPFGFRRRNDSADLRVVRVNAMSVCGRRKFVPVKLFGMDVRLQLD TASDITVIDRQLWKRIGSPCLRPVTIRAKTASGARLQLNGEFRAQVGIKEKSLVATIRVADANL RLLGTDLIDRFNLWSVPMDRFCCYISENQERPAESVMKIEQIKEQFPTVFRNTLGLCTKANIKL KLREGVAPIFRPKRPVAHAMESAVDDELNRLEKLGVITPTNFSEWAAPIVVVRKANGQIRICGD YSTGLNSSLCAHEYPLPLPDDIFAKLSGCHIFSKIDLSDAFLQVQIDEDYRHILTINTHRGLYY YNRLPPGIKVAPAAFQQLIDTMLAGTKRVCGYMDDLIIGGATEAEHDRHLKDVLKRIEEYGFTI RNEKCEFKTNEIRYLGHVIDSQGLRPDPNKIAAIRNLPEPTNLTEIRSFLGAINYYGKFVPNMR QLRFRLDELLKHGERFQWDHKCKEAFDQFKKILSSNLLLAHYNPNEKIVVSADASSVGLGATLS HRYADGSMKVVQHASRALTEAEKRYSQIDREGLAIVYAVTKFHRMLYGRHFLLQTDHRPLLQIF GSKKGIPIYTANRLQRFALTLQLYDFEIEYVRTEQFGNADILSRLIKNRSQPEDDYVIASIEME RDVKAMAIEAMSNFPISFREIERHTSADAMLRKVRHYIQDGWPTSVSYGNELACLNSRKDALTL IDGCILFGERVVIPQRLRERCLKQLHQGHPGMQRMKSVARSYIYWPFLDRDIMEYVRTCSSCAT AAKSPPHESPQAWGKTNTPWERIHVDYAGPIDGEYFLIVVDAHSKWPEIFKTPSSTSTATITML RGLFARFGMPVTLVTDNGTQFTSEAFSDFCLKNGVHHMRTAPFHPQSNGQAERFVDSFKRALRK IRIGGMALQEAIDIFLQTYRTTPNPQVEQNKSPAELMFGRHIRTCFELLRPPPRLENQATYNST RLFKQSDLVFIKEYSRNNWKWIPAVIVRRIGHVMYLVQTNDRRTRRCHMNQIRQRFYESTENRS LASIPLSVLLESWNLPLPPQTTINPSETETPVACTSIPQTSTTCMLQPESASQPTIASSRSTQH TPCHREAQQPLAPRRSSRNRTVPRRFAPYRMN.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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