Repbase Reports |
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| 2004, Volume 4, Issue 6 |
| June 30, 2004 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 153 |
GYPSY57-I_AG |
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GYPSY57-I_AG is an internal portion of retrotransposon GYPSY57_AG - a consensus sequence. |
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Submitted: 09-Jul-2004 |
Accepted: 09-JUL-2004 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag; AP protease; GYPSY57-I_AG; GYPSY57-LTR_AG; Gypsy clade; RNase-H; integrase GYPSY57_AG; mag lineage; reverse transcriptase |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
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Authors: Tubio,M.J., Costas,C.J. and Naveira,F.H. |
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Title: GYPSY57_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4(6), 153-153 (2004) |
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Abstract: GYPSY57_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY58_AG, GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY57-I_AG consensus was reconstructed after multiple alignment of 3 copies. The consensus encodes the 1483-aa GYPSY57_AGP gag-pol like polyprotein (pos. 135-4583). The sequence of the LTRs flanking GYPSY57-I is deposited as GYPSY57-LTR_AG. GYPSY57_AGP: MFNPEGDAEMDEQRRLSLNGARALNPGFVQPTQSAPMQPAQPPSQNPVASSAQAGLAMNGSETG MFLQMLNLMQQQMQQQQQQLSQQQQMMAHMMQQTPHTTAQPQQQAQQAQQYAQQPAAPRNPELI MDALAGSINEFRFEAESGVTFPAWYARYEDLFVQDASRLEDSAKVRLLIRKLGTAEHARYCNFI LPRVPRDLTFDDTVSKLKALFGSAESLLSKRYKCLQIVKAHNEDLMTFACRVNRACVDFQFSAM TEEQFKCLMLVCGLREEGDAEIRTRLLARIEDKADLTLEQLSAEAQRITSLKVDSAMIATEGNE RVFAMRGDYKQRYAQQTQRSFSKQQHPQQADRSAPAAKPPGPCWLCGDHHWIRDCSYRSHKCED CGKYGHREGHCNTAGRKKRKNNFYKRSSVATRVVSVNIFSVQQNRKYVTIHIGQKSARLQLDTG SDITIIGRKTWKQLGMPTLSPAQVHAKTATGAHIQLDGEFEADITINGRTETAIIRVIPSDLQL LGADLIDIFSLAAMPMNQFCNRIESDSAKWEKRFPAVFHGTGLCTKANIKLQLKENVRPIFCPK RPVAYAMQATVEKELDRLQALKVITPVDYSEWAAPIVVVRKGNGSIRICGDYSTGLNSALRSYE YPLPLPDDIFAKLAQSRFFSKIDLSDAFLQVEIDAKYRPLLTINTHRGLYYYNRLPPGIKIAPA AFQQLIDTMLAGLKGTSGYMDDVIVGGKTEREHDENLLNLFRRIQEFGFTIRADKCAFKMQQIE YLGFIVDSRGLRPNPAKIDIIQKLPTPTNISEVRSFLGAINYYGKFVSKMRDLRYPLDMLLKDE SKFLWTRECDRAFSKFKEILSSDLLLTHYDPNAEIVVSADASAVGLGATISHKYADGSIKVVQH ASRALTQAETRYSQIDREGLAIIFAVTKFHKMLYGRHFCLQTDHRPLVRIFGSKKGIPVYTANR LQRFALTLQLYDFSIEYVPTTKFGNADILSRLIREHAKPEPEYIIASAELEEDVSFVATNSINA FPLNFRDVARATNTDAVLKKVHQYVMEGWPRNLSYGADLARFFNRSEALSSVRGCILLGERVVI PTRLREKCLKQLHEGHPGMQRMKALARSYVYWPSLDEDISECVKTCHACAVAAKSPPHTKPLSW PATKQPWERIHIDYAGPINGEFYLVIVDANTKWPEVIKANSTSTAGTIAILRGVFARFGFPITL VSDNGPQFSSTAFTDYCCSKGIQHVTSPPFHPQSNGQAERFVDTFKRSVKKIEEGGASHGEALD IFLQAYRSTPNAALENHRSPAEAMFNRKIRTAMELLKPPPTTETLPEEHGRGFKSGDCVYAKWY SRNSWKWVPAQVVRIIGNVIYEVKTDDGRMHRRHVNQLRKRDIGSSEQSTNLAARTQLPLDLLI EGPRDVVPVEHPTVISSPLLPSSSDGVRGMTSSPPLPSPRPVPVQRRRRQQPVQSPRRSNRSRR FPRRLDGYLLQ.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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