Repbase Reports |
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| 2004, Volume 4, Issue 6 |
| June 30, 2004 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 159 |
GYPSY60-I_AG |
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GYPSY60-I_AG is an internal portion of retrotransposon GYPSY60_AG - a consensus sequence. |
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Submitted: 09-Jul-2004 |
Accepted: 09-JUL-2004 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag; AP protease; GYPSY60-I_AG; GYPSY60-LTR_AG; Gypsy clade; RNase-H; integrase GYPSY60_AG; mag lineage; reverse transcriptase |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
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Authors: Tubio,M.J., Costas,C.J. and Naveira,F.H. |
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Title: GYPSY60_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4(6), 159-159 (2004) |
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Abstract: GYPSY60_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY60-I_AG consensus was reconstructed after multiple alignment of 3 copies. The consensus presents two ORFs. ORF1 encodes a 1109-aa GYPSY60_AG1p gag+protease+reversotranscriptase+RNase polyprotein (pos. 216-3542) and the ORF2 encodes a 423?aa GYPSY60_AG2p containing only the integrase (pos. 3346-4614). The sequence of the LTRs flanking GYPSY60-I_AG is deposited as GYPSY60-LTR_AG.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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