Repbase Reports |
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| 2004, Volume 4, Issue 6 |
| June 30, 2004 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 163 |
GYPSY62-I_AG |
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GYPSY62-I_AG is an internal portion of retrotransposon GYPSY62_AG - a consensus sequence. |
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Submitted: 09-Jul-2004 |
Accepted: 09-JUL-2004 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag; AP protease; GYPSY62-I_AG; GYPSY62-LTR_AG; Gypsy clade; RNase-H; integrase GYPSY62_AG; mag lineage; reverse transcriptase |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
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Authors: Tubio,M.J., Costas,C.J. and Naveira,F.H. |
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Title: GYPSY62_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4(6), 163-163 (2004) |
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Abstract: GYPSY62_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY62-I_AG consensus was reconstructed after multiple alignment of 3 copies. The consensus encodes the 1441-aa GYPSY62_AGP gag-pol like polyprotein (pos. 179-4560). The sequence of the LTRs flanking GYPSY62-I is deposited as GYPSY62-LTR_AG. GYPSY62_AGP: MAELQQAILLMTELLQKLAQPNNTEQTLESLATNISEFSFDPENGITFEKWYSRYTDLFESDAK NLDDSAKVRLLLRKLDTPSHVRYVNFILPKLPKDVDFAGTVKILSQMFGTHTSIFNKRYQCLQL VKSEAEDIISYAGKVNRSCEDFDFKNMNIDQFKCLVFVSGLKGHAYADTRPRLLSRIECETAEA PVNLQTLINEYQRLVNLKEDTSMIERQSSSKQAVHVVQEKGSFHHPHTSKPEGKLPRTPCWQCG QMHFVRNCPFSEHQCKQCNRIGHKEGYCGCYSKRQTVPGGGEKKTSNQSPSNQPSHQQTNQPAN RQNNPRKVNARGVYIVNHIANHSSNRKYVPTLINGVATRLQLDTASDITVISKQTWNNLGNPSI IKPTIQAINASGKPLHLMGEFQCDVSINGKTARGRCFVTTTANLNLLGIDWIDLFKLWSVPLDS VCNQVTTKSIDQQISEFRAKHANVFNDSLGHCRKLKVKLFLKPNAKPIFCPKRPVPFNTIPLVD AELTRLQSLGILEPVDFSEWAAPIVAVRKPNGRVRICADYSTGLNEALEPNHYPLPTPEEIFAQ LNGSTVFSIVDLSDAYLQLEVDDDSKKLLTINTHRGLFRFNRLAPGVKSAPGVFQRVVDGMIAD IPGVRSFIDDVIVFGKDISSHATSLNLLFQRLKEYGFHVKAEKCHFFQSQLGYLGHIVDKQGIR PDPEKVKAIAALPPPTNVPELRSYLGAVNFYGRFVRNIHELRHPMDQLLKKDVKWQWTSACQQA FDQFKRTLQSNLLLMHYDPKLPIIVAADASSTGIGAVIFHQFPDGSMKAVQHASRTLAPAERNY GQPEKEALALVYAVTKFHKYLLGRHFTLLTDHKPLLSIFGSKKGIPLHTANRLQRWALTMLNYD FEIQHVSTNEFGCADLLSRLIDQTIQPEEEYVIAALSLEEDLVSILADTTEKVPVSFAALQKAT TTDATLQSVAQHIRDGWPSCSKNLSAAVQPYFLRRESLSMIDGCVMFGNRVIVPAQFRRRILQQ FHRGHPGIVRMKAIARSFVYWPGIDNEIEDFVKRCNPCSTAGKTPTKTTLESWPVPTKPWSRIH IDYAGPVDGVYFLIIADPYSKWPEVYMTKTTTAKATIKLLKQSFATFGVPEVIVSDNGTQFSSH EFLTFCTSEGIRHIRIAPYHPQSNGLAERFVDTLKRSLRKIRSGGETLEEALVTFLQVYRSTPS SDLGGKSPAELMFNRPLRTVSALLRPTTSEDGHTVRRDRTLQNDAFNRKHGAVKRSFQHGESVY VKVHQANSWQWKPGTIIEKIGSVNYNIFLEDQQRLIRSHANQLKSRFTETSQHTDQSTPLSIFF DNFGLQFPVEVPSTEIYVDVDSQDEEAVAVSQSNSFLTEDISEDEHENSDGSMVEPVDNEQTPV PVELSEQATSTMDRPRRTIQLPARFKPYWMFKP.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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