Repbase Reports |
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| 2004, Volume 4, Issue 6 |
| June 30, 2004 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 169 |
GYPSY65-I_AG |
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GYPSY65-I_AG is an internal portion of retrotransposon GYPSY65_AG - a consensus sequence. |
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Submitted: 09-Jul-2004 |
Accepted: 09-JUL-2004 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag; AP protease; GYPSY65-I_AG; GYPSY65-LTR_AG; Gypsy clade; RNase-H; integrase GYPSY65_AG; mag lineage; reverse transcriptase |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
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Authors: Tubio,M.J., Costas,C.J. and Naveira,F.H. |
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Title: GYPSY65_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4(6), 169-169 (2004) |
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Abstract: GYPSY65_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY65-I_AG consensus was reconstructed after multiple alignment of 3 copies. The consensus encodes the 1331-aa GYPSY65_AGP gag-pol like polyprotein (pos. 689-4681). The sequence of the LTRs flanking GYPSY65-I is deposited as GYPSY65-LTR_AG. GYPSY65_AGP: MEPNKLFGNLPPLSLAGVPLTERRTKWTTWKRGFEIWLRTAKIVDGTEKKNLLLTCGSLELQEI FFSIPDADVEADVDQGVDPYEIAILKLDEYFAPQRHEAHERFLFWSMKPEPEETLEKFVMRAQA HGSKCNFGATAAESAGIAIIDKVLQFVPANLRVKLLQEKNLSLDEVIKQINSYETSRVANEQMS GRSKSFEIDNQHIHHIKTLCRFCGRTHGQQSCPARDKTCAKCGKRGHFAVVCYSNAGQTSNRLH TNQRMQKRPFGGHFNDSELNKKTAKFARKIHAIQDDGNEPLECELVEMVSSANDSDELIWAKVG GILIEMQIDSGVQSNIIDDRTWASMRNNQVKIIGEARSPDRKFKAYAQTDCLEIITMFEAEIAI ADGLKELRTISKFYVVKNGPQPLLGKITAKQLGVLYVGLPSQHESINQVETFRAFPSIRGVSIH IPIDKTVTPVAQRLRRLPLPMLDKVDSKLNELVAKDIIEKVSEPSSWVSPMVIVVKDCGSIRLC IDMRQVNKAILRETHPLPTIEDIRWRMNGAKYFSRLDIKDAFHQLLLDEESKTLTTFITHRGLY RYKRMMFGISCAPEKFQKILEQVLADCPNTVNFIDDIIVTGKTETEHDLALEKVMEKIEEYGIL LNQSKCVFKLTEIEFVGQRFNQNGMLPALNKIEAIRSFRPPKNCEEVRSFLGLITYVGTFIPNL ATVSFPLRELTKNNAEFVWERDQNKAFNELIRLVSNVERLAHFDPHLKTRVVADASPVGLGAVL LQFQNEQPKVIAYASKSLTSTEQRYAQTEKEALALVWAVERFQIYLFGIRFELETDHKPLEAIF SPTSSPCLRIERWVLRLQAFSYDVIYRKGKTNIADPLSRLSSPTEVSEFDPDSTVYIRSVMENA AIDVQEVEIASSNDAEMRALKECLERGAWNYTDELLKPYQAFRLELGTVGDLVVRGSKLVIPKA IRQRMLELAHEGHPGRTKMQQRLRCTCWWPGMDEAIARLVSSCSGCQLVSQPDKPEPMKRRPLP HKPWVDVAIDFLGPLPTGDYLLVIIDYFSRYKEVEIVKKITAIETSERLERIFVRLGYPRTITL DNGRQFVSNYFDNYCKQRGILLNKTTPYWPQENGLVERQNRSLLKRLKISQAQNGDWKKDLGAY LSMYYATPHSTTGKTPSELMFNRNIRTKIPSLGDISTGSALPMSDYRDRDTCMKEKGRVTEDQR RKAKPSDIIVGDRVLLRNTMPGNKLSTPFGPQIAKVIEKQGSRVTVQDEQNGKLYDRNSSHLKE YKDPDDHRDGCERVVDNQEEGVGFNEPTTEEIPRTLSRPKREIKRPARFLS.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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