Repbase Reports |
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| 2004, Volume 4, Issue 6 |
| June 30, 2004 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 171 |
GYPSY66-I_AG |
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GYPSY66-I_AG is an internal portion of retrotransposon GYPSY66_AG - a consensus sequence. |
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Submitted: 09-Jul-2004 |
Accepted: 09-JUL-2004 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag; AP protease; GYPSY66-I_AG; GYPSY66-LTR_AG; Gypsy clade; RNase-H; integrase GYPSY66_AG; mag lineage; reverse transcriptase |
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Source: Anopheles gambiae |
Organism: Anopheles gambiae |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles |
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Authors: Tubio,M.J., Costas,C.J. and Naveira,F.H. |
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Title: GYPSY66_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
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Journal: Repbase Reports 4(6), 171-171 (2004) |
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Abstract: GYPSY66_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY66-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 1409-aa GYPSY66_AGP gag-pol like polyprotein (pos. 95-4321). The sequence of the LTRs flanking GYPSY66-I is deposited as GYPSY66-LTR_AG. GYPSY66_AGP: MTTLDPSSMAALSHMIAEALKTAIGSAAGEARQDATPSTSRAPSFSHPAYRTTEGTVCDYFDRM EWALQLNGIPTEKYADYARVHMGAELNNALKFLIAPKLPQEILYKDLRKTLETHFDKQRNKFVE SIKFRQITQQQGESIAQFTLRLKQGAAHCDYGEFLDRMLIEQLLHGLMERGICDEIIAKNPVTF KDACEIASTLEATHNTAQEVNAGMPSVESTNKLGYEQPKTKKTPASRATSKPSKSTRRETSQGK PKQGTTNPGMCNGCGGNHLRNQCRFRDARCNTCNKKGHISKVCRSRKTNHDEDSINPVNTRPEA SIDYVQTLNALQTTSPSGKKMVEVTIDGHPLHMELDTGAPCGIISEAKLKTIKKQFRLLPSERQ FSSYSGHSITCLGRLPVNVAMGSANRKLNVYVVSGTSEPLFGREWIAQFSDQIDINSMFAPNVS VQSVTDTEPSAIQKSKLNDLLENFREVFSDTPGKLIGPPAKVHLKPGATPIFSKAREVPLSLRE RYAAEINKKIAAGFYERVDYSEWASPTHIVVKKNGNIRITGNYKPTVNPRMIVDEHPIPKVEDI FNKLKGAAFFCHLDLTDAYTHLPIDDDFKHVLTLNTVTHGLIRPTRAVYGAANIPAIWQRRMES VLQDLNNVVNFYDDIIVAAANFDNLLETLKGTLQKLKDNGLRLNRAKCVFAVPSLECLGHKIDR HGLHKSDKHIAAIRDAPRPNTPEELQLFLGKATYYSSFIPNLSTRARSLRDLLTAQTFEWNDVA DEAYQDIKEALISPQVLVQYDPTLPVILATDASKTGLGAVLSHRLSDGTERPIAYASCTMSKTK QKYPQIDKEALAIVWAVKKFFHYLYARKFTLVTDHKPLTQILHPEKSLPTLCISRMANYADYLA HFNFDVVFKPTNLNTNADYCSRIPNNSNVNQFKDEGRSSGDDFEQFAHVQIEQLPVRAEHIARE TRKDPHLGKILQHLEQGQNLGQYGYKAPESKYTIAANCLLFEHRVVIPSTLRQAILNDLHVAHF GIVRMKALARSYVYWPGIDADIEKTAKECHACARYGPTPPRFDSHHWEYPSAPWERIHIDFAGP VCNTMLLIVVDAFSKWVEVKPTNTITSAATIKILDELFATYGVPITVVSDNGTQFTAKEFKEFL QKSGVKYHKLTAPYHPATNGQAERYVQTVKNGLKAMGTTSANLTRNLNTFLQHFRKTPHAETKD SPAKLFLGRNIRTRLDLVRPQAVHASVSERQKAQFRPAFRTLPPGQSVYVLSGNTRMDKWIPAT IFARLGDLHYDVLYNGQHLKRHIDQIRRFEMKTNDEEESSSAAISPPVATTTTSTPLAVSSSTA TRRLRFYGHAAPSAPAEPEQVVTADDDLEDETFSTPPSSPQPPGNVSTTLRRSTRLRQPPKKFS P.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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