Repbase Reports
2004, Volume 4, Issue 6
June 30, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 175

GYPSY68-I_AG

GYPSY68-I_AG is an internal portion of retrotransposon GYPSY68_AG - a consensus sequence.

Submitted:
09-Jul-2004 		Accepted:
09-JUL-2004
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag; AP protease; GYPSY68-I_AG; GYPSY68-LTR_AG; Gypsy clade; RNase-H; integrase GYPSY68_AG; mag lineage; reverse transcriptase
Source:
Anopheles gambiae 		Organism:
Anopheles gambiae 		Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
[] Authors:
Tubio,M.J., Costas,C.J. and Naveira,F.H.
Title:
GYPSY68_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.
Journal:
Repbase Reports 4(6), 175-175 (2004)
Abstract:
GYPSY68_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY67_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY68-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 345-aa GYPSY68_AG1p gag-like polyprotein (pos. 958-1992) and the 1024?aa GYPSY68_AG2p pol-like polyprotein (pos. 2430-5501). The sequence of the LTRs flanking GYPSY68-I_AG is deposited as GYPSY68-LTR_AG.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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