Repbase Reports
2004, Volume 4, Issue 6
June 30, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 177

GYPSY69-I_AG

GYPSY69-I_AG is an internal portion of retrotransposon GYPSY69_AG - a consensus sequence.

Submitted:
09-Jul-2004 		Accepted:
09-JUL-2004
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; 5-bp TSD gag; AP protease; GYPSY69-I_AG; GYPSY69-LTR_AG; Gypsy clade; RNase-H; integrase GYPSY69_AG; mag lineage; reverse transcriptase
Source:
Anopheles gambiae 		Organism:
Anopheles gambiae 		Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
[] Authors:
Tubio,M.J., Costas,C.J. and Naveira,F.H.
Title:
GYPSY69_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.
Journal:
Repbase Reports 4(6), 177-177 (2004)
Abstract:
GYPSY69_AG is a family of Gypsy-like LTR retrotransposons that, according to the amino acid sequence of its reverse transcriptase, is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY67_AG and GYPSY68_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY69-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 351-aa GYPSY69_AG1p gag-like polyprotein (pos. 201-1253) and the 1166?aa GYPSY69_AG2p pol-like polyprotein (pos. 1853-4621). The sequence of the LTRs flanking GYPSY69-I_AG is deposited as GYPSY69-LTR_AG.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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