Repbase Reports
2004, Volume 4, Issue 8
August 31, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 215

MUDR5A_CB

Caenorhabditis briggsae family of DNA transposons - a consensus.

Submitted:
13-Sep-2004 		Accepted:
13-SEP-2004
Key Words:
MuDR; DNA transposon; Transposable Element; Cb000282; DNA; MUDR superfamily; MUDR5A_CB
Source:
Caenorhabditis briggsae 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[] Authors:
Pavlicek,A. and Jurka,J.
Title:
MUDR5A_CB - a family of nonautonomous MUDR-like transposons.
Journal:
Repbase Reports 4(8), 215-215 (2004)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. Copies are 99% identical to the consensus. Contains 220bp-long TIRs and is flanked by 9bp target duplications. The central part contains an ORF with no clear similarity to known transposases. One variant listed as MUDR5B_CB. MUDR5A_CB_ORF: 3719-4430 (237 aa) MPRSSEYSRKVLDFTVEEFANQINQRRKRRKKIPDRKYSKRSHNNGGRTVSEFKKVNRNVSGESESGDDE RKADGNISSDEENDSDCDVNSLNSKPNVFDESGDIVEDEINCNSNDEHVNLVLDPSVDHLNSHDSCMDLS DDPRKYDSDSDEENDIFGYQNVNPVPKPSNRVSNDHSSQIDLRDVLGEKGSRKPESDSEEVTDVSTGQHV KPMSLKEKFPIGYMHRLSDDSDDSETK.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,D.L., Bao,Z., Blasiar,D., Blumenthal,T., Brent,R.M., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol 1(2), 166-192 (2003)

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