Repbase Reports
2004, Volume 4, Issue 9
September 30, 2004
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 234

GYPSY5-LTR_CB

Caenorhabditis briggsae family of LTR retrotransposons - a consensus.

Submitted:
22-Oct-2004 		Accepted:
22-OCT-2004
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; 5bp TSDs; Cb000539; GYPSY5-I_CB; GYPSY5-LTR_CB; Gypsy clade; LTR
Source:
Caenorhabditis briggsae 		Organism:
Caenorhabditis briggsae 		Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[] Authors:
Pavlicek,A. and Jurka,J.
Title:
GYPSY5_CB - a family of autonomous LTR retrotransposons.
Journal:
Repbase Reports 4(9), 234-234 (2004)
Abstract:
The consensus sequence was reconstructed from the Ensembl genome annotation. The internal part is listed as GYPSY5-I_CB. LTRs are flanked by 5bp target duplications. Related to GYPSY6-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY18-I_AG.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,D.L., Bao,Z., Blasiar,D., Blumenthal,T., Brent,R.M., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol 1(2), 166-192 (2003)

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