Repbase Reports |
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| 2005, Volume 5, Issue 1 |
| January 31, 2005 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 9 |
Gypsy-18-I_DR |
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An internal portion of the Gypsy-18_DR LTR retrotransposon - a fossilized sequence. |
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Submitted: 11-Feb-2005 |
Accepted: 11-FEB-2005 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; Gypsy superfamily; Gypsy-18-I_DR; Gypsy-18-LTR_DR; Gypsy-18_DR; endogenous retrovirus; gag; integrase; protease; reverse transcriptase |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy-18_DR, a family of LTR retrotransposons from zebrafish. |
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Journal: Repbase Reports 5(1), 9-9 (2005) |
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Abstract: Gypsy-18-I_DR is an internal portion of the Gypsy-18_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-18-LTR_DR. The genome contains one copy of Gypsy-18-I_DR that is flanked by identical LTRs. The internal portion contains two ORFs encoding Gypsy-like gag and pol proteins. The first ORF encodes the 612-aa Gypsy-18_DR1p gag (pos. 225- 2060). The second ORF encodes the 1578-aa Gypsy-18_DR2p pol protein (pos. 2021-6754) composed of the protease, reverse transcriptase, and integrase domains. This retrotransposon can be still active.
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Derived: Positions 4020218 4027018 Accession No chr10 Zebrafish |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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