Repbase Reports
2005, Volume 5, Issue 10
October 31, 2005
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 307

HAT2_MD

HAT2_MD - an autonomous hAT transposon from Monodelphis domestica; consensus sequence.

Submitted:
19-Oct-2005 		Accepted:
19-OCT-2005
Key Words:
hAT; DNA transposon; Transposable Element; Interspersed repeat; HAT2_MD
Source:
Monodelphis domestica 		Organism:
Monodelphis domestica 		Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[] Authors:
Gentles,A. and Jurka,J.
Title:
HAT2_MD, an autonomous hAT DNA transposon from M. domestica.
Journal:
Repbase Reports 5(10), 307-307 (2005)
Abstract:
Average similarity to consensus of copies is around 93% similarity. Like HAT1_MD, the sequence lacks the canonical CA-TG termini and 8 bp TSDs of hAT transposons, and may be incomplete. However, it has ~23 bp imperfect TIRs. The consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. The Broad Institute of MIT and Harvard, Cambridge, MA, USA. Monodelphis domestica sequencing consortium
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

© 2001-2024 - Genetic Information Research Institute