Repbase Reports
2005, Volume 5, Issue 11
November 30, 2005
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 363

ERV1_MD_I

ERV1_MD, a young endogenous retrovirus from Monodelphis domestica - consensus of internal sequence.

Submitted:
17-Nov-2005 		Accepted:
17-NOV-2005
Key Words:
ERV2; Endogenous Retrovirus; Transposable Element; ERV1_MD_I; Interspersed repeat; RNaseH; aspartyl protease; integrase; reverse transcriptase
Source:
Monodelphis domestica 		Organism:
Monodelphis domestica 		Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[] Authors:
Gentles,A. and Jurka,J.
Title:
ERV1_MD, a young class 2 endogenous retrovirus from the opossum M. domestica.
Journal:
Repbase Reports 5(11), 363-363 (2005)
Abstract:
Appears to have been active relatively recently, given the large number of full-length, nearly identical copies in the genome that are >98% similar. Average similarity of copies used in reconstruction, to this consensus, is 98.9%. The corresponding LTR is deposited as ERV1_MD_LTR. The sequence has three long overlapping ORFs encoding putative integrase, reverse transcriptase, and retroviral aspartyl protease domains. This consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. The Broad Institute of MIT and Harvard, Cambridge, MA, USA. Monodelphis domestica sequencing consortium
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

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