Repbase Reports |
|---|
| 2005, Volume 5, Issue 4 |
| April 30, 2005 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 80 |
CR1-8_SP |
|||
|---|---|---|---|
CR1-8_SP is a non-LTR retrotransposon - a consensus sequence. |
|||
|
Submitted: 29-Apr-2005 |
Accepted: 29-APR-2005 |
||
|
Key Words: CR1; Non-LTR Retrotransposon; Transposable Element; Interspersed repeat; reverse transcriptase; CR1-8_SP |
|||
|
Source: Strongylocentrotus purpuratus |
Organism: Strongylocentrotus purpuratus |
Taxonomy: Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus |
|
| [] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: CR1-8_SP, a family of non-LTR retrotransposons from the sea urchin genome. |
|||
|
Journal: Repbase Reports 5(4), 80-80 (2005) |
|||
Abstract: CR1-8_SP is a non-LTR retrotransposon that belongs to the CR1 clade. Copies of CR1-8_SP are ~3% divergent from the consensus sequence. The consensus sequence is incomplete due to 5' truncations of CR1-8_SP elements upon their retrotranspositions. CR1-8_SP encodes a protein (pos. 1-2800) composed of the reverse transcriptase domains. Due to the small number of copies, the coding region is not well reconstructed (frameshift/short deletion around position 420). The 3' terminus of CR1-8_SP is composed of the (CTCAA) microsatellite.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||