Repbase Reports |
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| 2005, Volume 5, Issue 6 |
| June 30, 2005 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 164 |
SINE2-6_SP |
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A family of SINE retrotransposons - a consensus sequence. |
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Submitted: 01-Jul-2005 |
Accepted: 01-JUL-2005 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous; SINE2; Interspersed repeat; SINE2-4a_SP; SINE2-4b_SP; SINE2-6_SP |
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Source: Strongylocentrotus purpuratus |
Organism: Strongylocentrotus purpuratus |
Taxonomy: Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: SINE2-6_SP, a family of SINE2 retrotransposons in the sea urchin genome. |
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Journal: Repbase Reports 5(6), 164-164 (2005) |
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Abstract: The genome harbors several hundred copies of SINE2-6_SP elements that are ~95% identical to the SINE2-6_SP consensus sequence (>1000 elements ale ~85% identical to the consensus). The SINE2-6_SP 150-bp 5'-terminal portion is ~91% identical to to the 5' terminal parts of SINE2-4a_SP, SINE2-4b_SP, and SINE2-4c_SP elements. The remaining 224-bp portion of SINE2-6_SP is not related to SINE2-4_SP-like elements (excluding the 3' terminus composed of the ATT minisatellite. Putative classification: a CR1-dependent SINE2.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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