Repbase Reports
2006, Volume 6, Issue 1
January 31, 2006
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 46

SINE3-2_AO

SINE3 nonautonomous non-LTR retrotransposon - a consensus sequence.

Submitted:
24-Jan-2006 		Accepted:
02-FEB-2006
Key Words:
SINE3/5S; SINE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous; SINE3-2_AO
Source:
Aspergillus oryzae 		Organism:
Aspergillus oryzae 		Taxonomy:
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus
[] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
SINE3-2_AO, a family of 5S rRNA-derived nonautonomous non-LTR retrotransposons in the Aspergillus oryzae genome.
Journal:
Repbase Reports 6(1), 46-46 (2006)
Abstract:
SINE3-2_AO is a family of SINE3-like retrotransposons in the A. oryzae genome (a conceptual consensus sequence, 2 copies). The 65-bp 5' terminal portion (pos. 6-70) is derived from 5S rRNA (pos. 3-67, 98% identity to the A. oryzae 5S r RNA) and includes the polIII internal promoter. SINE3-2_AO encodes a hypothetical protein (pos 400-2500). There are several diverged families of SINE3-2_AO-like elements in the A. nidulans, A. fumigatus, and A. oryzae genomes.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Galagan,J.E., Calvo,S.E., Cuomo,C., Ma,L.J., Wortman,J.R., Batzoglou,S., Lee,S.I., Spevak,C.C., Basturkmen,M. et al.
    Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
    Nature 438(7071), 1105-1115 (2005)

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