Repbase Reports
2006, Volume 6, Issue 2
February 28, 2006
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 100

Mariner-4B_AF

A subfamily of nonautonomous Mariner DNA transposons - a consensus sequence.

Submitted:
28-Feb-2006 		Accepted:
08-MAR-2006
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; mariner; Interspersed repeat; Mariner-4_AF; Mariner-4B_AF
Source:
Aspergillus fumigatus 		Organism:
Aspergillus fumigatus 		Taxonomy:
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus
[] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Mariner-4_AF, a family of Mariner DNA transposons in the Aspergillus fumigatus genome.
Journal:
Repbase Reports 6(2), 100-100 (2006)
Abstract:
It is a nonautonomous subfamily of Mariner-4_AF from the Mariner superfamily (Tc1 clade). The Mariner-4B_AF and Mariner-4_AF consensus sequences are 84% identical to each other. The 16% divergence is due to 327 mismatches (all are transitions) induced by RIP. The transposase coding region of Mariner-4_AF was completely destroyed by RIP in Mariner-4B_AF.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Galagan,J.E., Calvo,S.E., Cuomo,C., Ma,L.J., Wortman,J.R., Batzoglou,S., Lee,S.I., Spevak,C.C., Basturkmen,M. et al.
    Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
    Nature 438(7071), 1105-1115 (2005)

© 2001-2024 - Genetic Information Research Institute