Repbase Reports |
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| 2007, Volume 7, Issue 11 |
| November 30, 2007 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 1178 |
Helitron-1_DR |
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A family of autonomous Helitrons - a fossilized copy. |
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Submitted: 30-Nov-2007 |
Accepted: 30-NOV-2007 |
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Key Words: Helitron; DNA transposon; Transposable Element; Helitron-1N1_DR; Helitron-1_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: RPA70-encoding Helitrons in zebrafish. |
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Journal: Repbase Reports 7(11), 1178-1178 (2007) |
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Abstract: This is a young family of autonomous Helitrons. It encodes a 2505-aa RepHel protein (pos. 14055-21569) and a ssDNA-binding RPA70-like protein (3 exons at pos. 3828-7844). The RepHel protein is composed of the OTU cysteine protease (pos. 232-347), Rep, Hel, and AP endonuclease (pos. 2291-2441) domains. Helitron-1_DR contains also copies of several different transposable elements (they appear old). This transposon is inserted into a long array of (TAA)n microsatellite. Helitron-1N1_DR is a nonautonomous deletion derivate of Helitron-1_DR that was transposed by the Helitron-1_DR-encoded proteins. The genome contains several families of Helitrons coding for both RPA70 and RepHel proteins.
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Derived: Positions 27552 1253 Accession No CAAK03016851 Genbank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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