Repbase Reports |
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| 2007, Volume 7, Issue 11 |
| November 30, 2007 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 1180 |
SINE3-1_TC |
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This is a recently retrotransposed family of SINE3 elements - a consensus sequence. |
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Submitted: 28-Nov-2007 |
Accepted: 28-NOV-2007 |
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Key Words: SINE3/5S; SINE; Non-LTR Retrotransposon; Transposable Element; Nonautonomous; SINE3-1_TC |
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Source: Tribolium castaneum |
Organism: Tribolium castaneum |
Taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: SINE3-1_TC, a family of SINE3 retrotransposons from the red flour beetle genome. |
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Journal: Repbase Reports 7(11), 1180-1180 (2007) |
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Abstract: This is a first family of SINE3 retrotransposons identified in insects. SINE3-1_TC contains a pol III internal promoter (pos. 47-93) derived from 5S rRNA (81% identity to the 5S rRNA present in the beetle genome). SINE3-1_TC elements are flanked by 8-10 bp long target site duplications. The 3' terminus is composed of the (ATATTT) microsatellite. Based on presence of TSDs and the 3'-microsatellite, it is expected that SINE3-1_TC elements were retrotransposed by an endonuclease and reverse transcriptase expressed by a I-like non-LTR retrotransposon. This family includes >20 copies that are only ~1% divergent from the consensus sequences.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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