Repbase Reports
2007, Volume 7, Issue 12
December 31, 2007
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 1189

hAT5-2_NV

Starlet sea anemone hAT5-2_NV autonomous hAT DNA transposon - a conceptual consensus sequence.

Submitted:
30-Dec-2007 		Accepted:
02-JAN-2008
Key Words:
hAT; DNA transposon; Transposable Element; 5-bp TSDs; hAT5 group; hAT5-2_NV
Source:
Nematostella vectensis 		Organism:
Nematostella vectensis 		Taxonomy:
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
[] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
hAT5 - a novel group of autonomous hAT DNA transposons characterized by 5-bp target site duplications.
Journal:
Repbase Reports 7(12), 1189-1189 (2007)
Abstract:
hAT5-2_NV is a young family of hAT DNA transposons and it belongs to a novel group of hAT transposons, called hAT5, generating 5-bp target site duplications upon their insertions into chromosomal DNA. The hAT5 transposase is similar to the standard hAT transposase (they share conserved catalytic motifs and converge with each other after a few rounds of PSI-BLAST); identified hAT5 transposase sequences form a distinctive phylogenetic cluster and they are also present in different species, e.g. sea urchin. hAT5-2_NV is flanked by 13-bp TIRs (3 mismatches) and encodes a 781-aa transposase (3 exons). The transposase contains the C2H2 motif present in diverse hAT transposase sequences encoded by different hAT transposons.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Putnam,N.H., Srivastava,M., Hellsten,U., Dirks,B., Chapman,J., Salamov,A., Terry,A., Shapiro,H., Lindquist,E. et al.
    Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
    Science 317(5834), 86-94 (2007)

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