Repbase Reports
2007, Volume 7, Issue 12
December 31, 2007
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 1195

hAT6-N2_NV

A family of non-autonomous hAT DNA transposons - a consensus sequence.

Submitted:
31-Dec-2007 		Accepted:
02-JAN-2008
Key Words:
hAT; DNA transposon; Transposable Element; Nonautonomous; NVREP301; hAT6-N2_NV
Source:
Nematostella vectensis 		Organism:
Nematostella vectensis 		Taxonomy:
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
[] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
hAT6 - a novel group of hAT DNA transposons characterized by 6-bp target site duplications.
Journal:
Repbase Reports 7(12), 1195-1195 (2007)
Abstract:
It is a family of non-autonomous hAT DNA transposons that belong to the hAT6 group, characterized by 6-bp target site duplications. hAT6-N2_NV contains 13-bp imperfect TIRs (1 mismatch) and shares common termini with the autonomous hAT6-2_NV. The hAT6-N2_NV family is relatively ancient: genomic elements are ~10% divergent from the consensus sequence (11% with CpG included).
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Putnam,N.H., Srivastava,M., Hellsten,U., Dirks,B., Chapman,J., Salamov,A., Terry,A., Shapiro,H., Lindquist,E. et al.
    Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
    Science 317(5834), 86-94 (2007)

© 2001-2024 - Genetic Information Research Institute