Repbase Reports |
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| 2008, Volume 8, Issue 1 |
| January 31, 2008 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 9 |
Transib-9_HM |
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Autonomous Transib DNA transposon -a consensus sequence. |
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Submitted: 30-Jan-2008 |
Accepted: 30-JAN-2008 |
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Key Words: Transib; DNA transposon; Transposable Element; Transib-9_HM |
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Source: Hydra vulgaris |
Organism: Hydra vulgaris |
Taxonomy: Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Autonomous Transib transposons from the hydra genome. |
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Journal: Repbase Reports 8(1), 9-9 (2008) |
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Abstract: Transib-9_HM is a family of autonomous Transib DNA transposons that were active in the hydra genome more than a few million years ago (copies are ~8% divergent from their consensus sequence). The consensus sequence was obtained based on a multiple alignment of a few copies copies; it codes for a 678-aa Transib transposase (3 exons). Like other Transib transposons, Transib-9_HM is characterized by 5-bp target site duplications and short terminal inverted repeats. The Transib-9_HM transposase forms a distinctive cluster together with Transib-1_HM and the sea urchin RAG1-like protein (GenBank, NP_001028179). This sequence was derived from sequence data generated by TIGR, J Craig Venter Institute.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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