Repbase Reports

2008, Volume 8, Issue 2
February 29, 2008
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 37

Transib-12_HM

Autonomous Transib DNA transposon -a consensus sequence.

Submitted:
31-Jan-2008
Accepted:
31-JAN-2008
Key Words:
Transib; DNA transposon; Transposable Element; Transib-12_HM
Source:
Hydra vulgaris
Organism:
Hydra vulgaris
Taxonomy:
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
[] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Autonomous Transib transposons from the hydra genome.
Journal:
Repbase Reports 8(2), 37-37 (2008)
Abstract:
Transib-12_HM is a young family of autonomous Transib DNA transposons that were active in the hydra genome less than a few million years ago (copies are ~4% divergent from their consensus sequence). The consensus sequence was obtained based on multiple alignment of 10 copies; it codes for a 654-aa Transib transposase. Like other Transib transposons, Transib-12_HM is characterized by 5-bp target site duplications and short terminal inverted repeats. This sequence was derived from sequence data generated by TIGR, J Craig Venter Institute.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute