Repbase Reports |
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| 2009, Volume 9, Issue 1 |
| January 31, 2009 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 50 |
CR1-X1_Pass |
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CR1 Non-LTR Retrotransposon from Passeriformes. |
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Submitted: 08-Jan-2009 |
Accepted: 21-JAN-2009 |
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Key Words: CR1; Non-LTR Retrotransposon; Transposable Element; CR1-X1_Pass; LINE |
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Source: Passeriformes |
Organism: Passeriformes |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae |
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Authors: Smit,A.F. |
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Title: CR1-X1_Pass - CR1 Non-LTR Retrotransposon from Passeriformes. |
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Journal: Repbase Reports 9(1), 50-50 (2009) |
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Abstract: subfamily1 17%. gag ORF (full) 311-1453, pol (1 frameshift) 1618-4348, but, like the distantly related R1-YB2_Tgu, there is a frameshift that appears tru in the consensus. The frameshift (2 bp missing) is at 3807, corresponding to pos 3239 of CR1-YB2_Pass. Notably, this is at a different, later spot then in CR1-YB2_Pass.With 600 copies of terminal 700 bp, coseg could find 2 or 3 subfamilies. These are at most 5-6% different from each other, and I get the impression that recombined copies have hopped around, so there is only one consensus. Absent at orthologous sites in chicken.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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