Repbase Reports |
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| 2009, Volume 9, Issue 5 |
| May 31, 2009 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 950 |
Gypsy108-I_Dr |
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An internal portion of the Gypsy-108_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 29-Apr-2009 |
Accepted: 29-APR-2009 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; Interspersed repeat; Gypsy superfamily; endogenous retrovirus; gag; reverse transcriptase; integrase; Gypsy-108_DR; Gypsy-108-LTR_DR; Gypsy-108-I_DR; Gypsy108-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Dib,M.R. and Naveira,H.F. |
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Title: Gypsy108_DR, a family of LTR retrotransposons from zebrafish. |
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Journal: Repbase Reports 9(5), 950-950 (2009) |
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Abstract: Gypsy108-I_DR is an internal portion of the Gypsy108_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy108-LTR_DR. Gypsy108_DR is characterized by 4-bp target site duplications. The internal portion encodes two proteins: the 327-aa gag Gypsy108_DR1p (pos. 17-997) and 1105-aa polyprotein (pos. 985-4299, conceptual translation) composed of the protease, reverse transcriptase, and integrase domains. Some insertions fairly recent, according to the hight identity between their flanking LTRs. Consensus obtained after the alignment of at least three independent insertions bearing at least 85% Homology over at least 1000bp.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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