Repbase Reports |
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| 2009, Volume 9, Issue 7 |
| July 31, 2009 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 1561 |
Proto2-6_CS1 |
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Annelida Proto2-6_CS1 autonomous Non-LTR Retrotransposon - consensus. |
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Submitted: 15-Jul-2009 |
Accepted: 15-JUL-2009 |
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Key Words: Proto2; Non-LTR Retrotransposon; Transposable Element; Proto2-6_CS1 |
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Source: Capitella sp. 1 |
Organism: Capitella sp. 1 |
Taxonomy: Eukaryota; Metazoa; Lophotrochozoa; Annelida; Polychaeta; Scolecida; Capitellida; Capitellidae; Capitella |
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Authors: Kapitonov,V. and Jurka,J. |
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Title: Proto2, a novel clade of metazoan non-LTR retrotransposons. |
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Journal: Repbase Reports 9(7), 1561-1561 (2009) |
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Abstract: Proto2-6_CS1 is a very young family of non-LTR retrotransposons present in the annelid genome. It belongs to a novel clade of metazoan non-LTR retrotransposons called Proto2. This clade includes families of non-LTR retrotransposons present in the hydra (from Proto2-1_HM to Proto2-5_HM), annelid (from Proto2-1_CS1 to Proto2-8_CS1), hemichordate (Proto2-1_SK) and amphioxus (Proto2-1_BF) genomes. A model Proto2 non-LTR retrotransposon is ~4.3 kb long, contains two ORFs; its 3' terminus is composed of microsatellites; usually there is no target site duplications generated upon retrotransposition of Proto2 elements. ORF1 codes for a protein conserved in Proto2 elements from all species mentioned above. ORF2 codes for a protein composed from the AP endonuclease and reverse transcriptase domains. It appears that the Proto2 clade is a clade ancestral to the RTE and RTEX clades.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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